[Nhcoll-l] Specimens vs assemblies
Derek Sikes
dssikes at alaska.edu
Tue Nov 16 12:34:20 EST 2021
I cover some of these issues in a short article:
https://www.researchgate.net/publication/340038603_What_is_a_specimen_What_should_we_count_and_report_when_managing_an_entomology_collection
The database we use, Arctos, is quite flexible in accommodating such
specimens. The most common case is when we get a donation of vials that
have had their contents identified to mixed taxa. The most extreme case was
a PhD student's voucher collection - each large vial was a bulk sample that
he had 1) identified the contents to family and counted all the individuals
in each. Thus, one vial of this donation = many different records in our
database, one for each lowest identification.
This does make it harder to count the collection though. One needs to be
very specific about what one wants to count: vials? specimens? lowest
identifications? In the case I just mentioned the number of vials would be
far lower than the number of identifications and that would be far lower
than the number of specimens (eg. 100 vials, 1000 identifications, 10000
specimens). Of course, if we had enough resources we would break these
vials out into unmixed vials, which greatly increases their accessibility
to further taxon-specific research.
Arctos also has an object-tracking system that uses a hierarchical nested
container system to keep track of where specimens are. We still organize
the collection taxonomically, but for situations like this, it's great to
have a parallel system so such a composite lot would be easy to find.
And of course as Beth stated, it's simple to record a beetle on a pin with
a nematomorph emerging from inside it as two linked database records. One
pin, one barcode label, two records, two phyla, two GUIDs.
https://arctos.database.museum/guid/UAM:Ento:111995
-Derek
On Tue, Nov 16, 2021 at 5:48 AM Elizabeth Wommack <ewommack at uwyo.edu> wrote:
> Hi Paul,
>
> Interesting problem. With reference to vertebrates I would say it is
> potentially closest to when we deal with parasites. Those do live on and in
> a vertebrate.
>
> I would have a couple different things to think about on whether or not I
> separate them:
> 1. Are you going to lose or damage one of them in the preparation process
> of the main organism? For a bird, I probably would lose the internal
> parasites when preparing a skin, so I remove them and save them separately.
>
> 2. If you keep them together as a group, will they be easy to find in your
> collection? That is another reason to separate the parasites versus the
> host in my museum. We do not have a reference system that tells people,
> look in the bird skin collection if you are interested in parasites.
> Doesn't mean we couldn't set it up that way, but it would involve some
> thought process.
>
> And Dirk is right that our databases now have great ways to record and
> track these types of relationships.
> Check out these examples from Arctos which use relationships to record the
> type of data you are talking about:
> https://arctos.database.museum/guid/DMNS:Bird:44431 (ate and
> host/parasite)
> https://arctos.database.museum/guid/UAM:Ento:378955 (iNaturalist to
> museum object)
>
> Assemblages are something I haven't dealt with much in vertebrate
> collections. I would be really interested to hear how other types of
> collections use those.
>
> cheers,
> Beth Wommack
>
>
> On Tue, Nov 16, 2021 at 7:07 AM Dirk Neumann <neumann at snsb.de> wrote:
>
>> ◆ This message was sent from a non-UWYO address. Please exercise caution
>> when clicking links or opening attachments from external sources.
>>
>> Hi Paul,
>>
>> from a database perspective, would this not just be a separate storage
>> collection that would need to be entered for the associated species in
>> their respective taxon-based databases?
>>
>> In the case of some (Marine) parasites, it would also be very difficult
>> to separate the different organisms, I think the key challenges from a
>> collections management point of view are
>> - knowing that these specimens are there
>> - and where I could find them (if they are obviously not in the
>> respective taxonomic collection, but still associated with the sea fan)
>>
>> Also - very classical solution - you could created dummy lots without
>> contents for the respective collections so that there is a physical
>> representation of "the jar", and the printed label says says where to find
>> the object.
>>
>> Mixed samples (also: eDNA, soil samples) will be difficult to handle in
>> taxon-based collections, but surely will increase (unsorted malaise traps
>> returned from the field would in principle also belong into this category).
>> We can handle this more easily now in our databases by setting respective
>> references and internal linkages; this surely was more of a challenge back
>> in the days of file cards and hand-written inventory book entries.
>>
>> By separating them, you definitely loose "information" - I would keep
>> them together, unless a specific (research) question requires
>> "disconnection".
>>
>> Hope this helps
>> Dirk
>>
>>
>> Am 16.11.2021 um 14:46 schrieb Callomon,Paul:
>>
>> Folks,
>>
>>
>>
>> I’m working with some interesting questions at the moment and thought I’d
>> ask for colleagues’ input. Look on it as broader service to science or
>> something.
>>
>>
>>
>> 1. I’m dealing today with a sea fan (Cnidaria: Alcyonacea) that bears
>> several wing oysters (Mollusca: Pteriidae) and barnacles (Crustacea:
>> Cirripeda) as well as a couple of tube worms (Annelida: Polychaeta) and
>> countless diatoms. As a collections manager, do I physically separate the
>> individual specimens and send them off to their respective collections
>> (General Invertebrates [Cnidaria], Mollusca and General Invertebrates
>> [Crustacea] and [Annelida]) or preserve the assemblage intact? If they were
>> tigers and snails collected at the same spot, for example, there would be
>> no problem doing this; but snails don’t live on tigers.
>> 2. If I choose not to separate them (correctly, I think), then once I
>> catalog the individual taxa into their respective databases, into which
>> collection does the assemblage physically go? All four epibionts are
>> attached to the sea fan, so that would seem to have the best claim to
>> priority as it’s both a specimen in its own right and a substrate for the
>> others. The problem there is that our General Invertebrates collection is
>> not funded, whereas our mollusk collection is. Our neontological
>> “departments” are all taxon-based and each has its own community of
>> curators, managers, associates and researchers as well as its own demands
>> on space, infrastructure and support.
>> 3. Most museums divide their Recent collections by taxon as above.
>> However, this contrasts with Vertebrate and Invertebrate Paleontology,
>> which are pan-taxonomical disciplines. Our Recent crabs, for example, go in
>> the Crustacea collection, away from their commensal mollusk chums, but
>> fossil crabs and mollusks both belong in a single Invertebrate Paleontology
>> collection, while fossil fishes and mammoths snuggle up in the Vertebrate
>> Paleontology collection.
>> 4. How then does the existence and maintenance of neontological
>> taxon-based collections (Entomology, Malacology, Mammalogy etc) configure
>> science – does it encourage the emergence of museum entomologists,
>> malacologists and mammalogists over, say, benthic ecologists?
>>
>>
>>
>> Paul Callomon
>>
>> Collection Manager, Malacology and General Invertebrates
>> ------------------------------
>>
>> *Academy of Natural Sciences of Drexel University*
>>
>> 1900 Benjamin Franklin Parkway, Philadelphia PA 19103-1195, USA
>> *prc44 at drexel.edu* <prc44 at drexel.edu>* Tel 215-405-5096 - Fax
>> 215-299-1170*
>>
>>
>>
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>> --
>>
>>
>> Dirk Neumann
>>
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>> Dirk Neumann
>>
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>>
>> postal address:
>>
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>
> --
> Elizabeth Wommack, PhD
> Curator and Collections Manager of Vertebrates
> University of Wyoming Museum of Vertebrates
> Berry Biodiversity Conservation Center
> University of Wyoming,
> Laramie, WY 82071
> ewommack@ <ewommack at berkeley.edu>uwyo.edu
> www.uwymv. <http://www.uwymv.edu/>org
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> natural history collections to ensure their continuing value to
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> Advertising on NH-COLL-L is inappropriate.
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--
+++++++++++++++++++++++++++++++++++
*Derek S. Sikes*, Curator of Insects, Professor of Entomology
University of Alaska Museum (UAM), University of Alaska Fairbanks
1962 Yukon Drive, Fairbanks, AK 99775-6960
dssikes at alaska.edu phone: 907-474-6278 he/him/his
University of Alaska Museum <https://www.uaf.edu/museum/collections/ento/>
- search 357,704 digitized arthropod records
<http://arctos.database.museum/uam_ento>
+++++++++++++++++++++++++++++++++++
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